J3_7QG8_028

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7QG8|1|0|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QG8_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0715

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7QG8|1|0|G|46
7QG8|1|0|C|47
7QG8|1|0|C|48
7QG8|1|0|U|49
7QG8|1|0|A|50
7QG8|1|0|A|51
7QG8|1|0|C|52
*
7QG8|1|0|G|359
7QG8|1|0|G|360
7QG8|1|0|G|361
7QG8|1|0|G|362
7QG8|1|0|A|363
7QG8|1|0|A|364
7QG8|1|0|U|365
7QG8|1|0|A|366
7QG8|1|0|U|367
*
7QG8|1|0|A|393
7QG8|1|0|G|394
7QG8|1|0|C|395

Current chains

Chain 0

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S12

Chain I

30S ribosomal protein S16