J3_7QGH_004

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7QGH|1|0|U|871

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGH_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0661

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7QGH|1|0|C|826
7QGH|1|0|U|827
7QGH|1|0|U|828
7QGH|1|0|G|829
*
7QGH|1|0|C|857
7QGH|1|0|G|858
7QGH|1|0|G|859
7QGH|1|0|A|860
7QGH|1|0|G|861
*
7QGH|1|0|C|868
7QGH|1|0|G|869
7QGH|1|0|U|870
7QGH|1|0|U|871
7QGH|1|0|A|872
7QGH|1|0|A|873
7QGH|1|0|G|874

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 1

30S ribosomal protein S2

Chain 7

30S ribosomal protein S8

Chain s

30S ribosomal protein S21