J3_7QGR_013

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7QGR|1|0|U|1240, 7QGR|1|0|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGR_013 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1273

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7QGR|1|0|C|1237
7QGR|1|0|A|1238
7QGR|1|0|A|1239
7QGR|1|0|U|1240
7QGR|1|0|G|1241
*
7QGR|1|0|C|1296
7QGR|1|0|G|1297
7QGR|1|0|U|1298
7QGR|1|0|A|1299
7QGR|1|0|G|1300
7QGR|1|0|U|1301
7QGR|1|0|C|1302
7QGR|1|0|C|1303
*
7QGR|1|0|G|1334
7QGR|1|0|U|1335
7QGR|1|0|C|1336
7QGR|1|0|G|1337

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 6

30S ribosomal protein S7

Chain D

30S ribosomal protein S13