J3_7QGR_028

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7QGR|1|0|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGR_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0715

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7QGR|1|0|G|46
7QGR|1|0|C|47
7QGR|1|0|C|48
7QGR|1|0|U|49
7QGR|1|0|A|50
7QGR|1|0|A|51
7QGR|1|0|C|52
*
7QGR|1|0|G|359
7QGR|1|0|G|360
7QGR|1|0|G|361
7QGR|1|0|G|362
7QGR|1|0|A|363
7QGR|1|0|A|364
7QGR|1|0|U|365
7QGR|1|0|A|366
7QGR|1|0|U|367
*
7QGR|1|0|A|393
7QGR|1|0|G|394
7QGR|1|0|C|395

Current chains

Chain 0

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S12

Chain G

30S ribosomal protein S16