J3_7QGU_019

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGU_019 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1112

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7QGU|1|W|U|953
7QGU|1|W|G|954
7QGU|1|W|G|955
7QGU|1|W|A|956
*
7QGU|1|W|U|1244
7QGU|1|W|A|1245
7QGU|1|W|C|1246
*
7QGU|1|W|G|1346
7QGU|1|W|G|1347
7QGU|1|W|A|1348
7QGU|1|W|A|1349

Current chains

Chain W

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S9

Chain r

30S ribosomal protein S13

Chain z

Transfer RNA; tRNA