J3_7QIW_014

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UAUC*GUU*ACCAAUA

Length

14 nucleotides

Bulged bases

7QIW|1|2|A|2891, 7QIW|1|2|U|2892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QIW_014 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.0815

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7QIW|1|2|U|2890
7QIW|1|2|A|2891
7QIW|1|2|U|2892
7QIW|1|2|C|2893
*
7QIW|1|2|G|2918
7QIW|1|2|U|2919
7QIW|1|2|U|2920
*
7QIW|1|2|A|2934
7QIW|1|2|C|2935
7QIW|1|2|C|2936
7QIW|1|2|A|2937
7QIW|1|2|A|2938
7QIW|1|2|U|2939
7QIW|1|2|A|2940

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Q

60S ribosomal protein uL13

Chain X

60S ribosomal protein uL14