J3_7QIW_023
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GAAA*UCAUAA(OMC)*GUC
- Length
- 14 nucleotides
- Bulged bases
- 7QIW|1|2|U|1846, 7QIW|1|2|A|1847
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIW_023 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0757
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7QIW|1|2|G|1499
7QIW|1|2|A|1500
7QIW|1|2|A|1501
7QIW|1|2|A|1502
*
7QIW|1|2|U|1843
7QIW|1|2|C|1844
7QIW|1|2|A|1845
7QIW|1|2|U|1846
7QIW|1|2|A|1847
7QIW|1|2|A|1848
7QIW|1|2|OMC|1849
*
7QIW|1|2|G|1858
7QIW|1|2|U|1859
7QIW|1|2|C|1860
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain i
- 60S ribosomal protein eL34
- Chain l
- Ribosomal protein L37
- Chain n
- 60S ribosomal protein eL39
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