J3_7QIW_029
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- UCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 7QIW|1|5|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIW_029 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.1576
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7QIW|1|5|U|9
7QIW|1|5|C|10
7QIW|1|5|A|11
7QIW|1|5|U|12
7QIW|1|5|A|13
7QIW|1|5|C|14
*
7QIW|1|5|G|65
7QIW|1|5|G|66
*
7QIW|1|5|U|109
7QIW|1|5|G|110
Current chains
- Chain 5
- 5S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Ribosomal_L18_c domain-containing protein
- Chain L
- 60S ribosomal protein L10
- Chain M
- 60S ribosomal protein uL5
- Chain V
- 60S ribosomal protein eL21
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