J3_7QIW_030

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AC*GAUACUU*AGUCU

Length

14 nucleotides

Bulged bases

7QIW|1|8|U|65, 7QIW|1|8|C|67

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QIW_030 not in the Motif Atlas

Homologous match to J3_8C3A_060

Geometric discrepancy: 0.1113

The information below is about J3_8C3A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38265.2

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

8

Unit IDs

7QIW|1|8|A|49
7QIW|1|8|C|50
*
7QIW|1|8|G|63
7QIW|1|8|A|64
7QIW|1|8|U|65
7QIW|1|8|A|66
7QIW|1|8|C|67
7QIW|1|8|U|68
7QIW|1|8|U|69
*
7QIW|1|8|A|101
7QIW|1|8|G|102
7QIW|1|8|U|103
7QIW|1|8|C|104
7QIW|1|8|U|105

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain Z

Ribosomal_L23eN domain-containing protein

Chain j

Similar to 60S ribosomal protein L35

Chain l

Ribosomal protein L37

Chain n

60S ribosomal protein eL39