J3_7QIZ_006
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 7QIZ|1|2|G|934
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_006 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1539
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7QIZ|1|2|U|824
7QIZ|1|2|G|825
7QIZ|1|2|A|826
7QIZ|1|2|A2M|827
7QIZ|1|2|C|828
7QIZ|1|2|PSU|829
7QIZ|1|2|A|830
*
7QIZ|1|2|U|915
7QIZ|1|2|A|916
7QIZ|1|2|G|917
*
7QIZ|1|2|C|933
7QIZ|1|2|G|934
7QIZ|1|2|A|935
7QIZ|1|2|A|936
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain P
- Ribosomal protein L15
- Chain l
- Ribosomal protein L37
- Chain n
- 60S ribosomal protein eL39
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