J3_7QIZ_014

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UAUC*GUU*ACCAAUA

Length

14 nucleotides

Bulged bases

7QIZ|1|2|A|2891, 7QIZ|1|2|U|2892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QIZ_014 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.0833

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7QIZ|1|2|U|2890
7QIZ|1|2|A|2891
7QIZ|1|2|U|2892
7QIZ|1|2|C|2893
*
7QIZ|1|2|G|2918
7QIZ|1|2|U|2919
7QIZ|1|2|U|2920
*
7QIZ|1|2|A|2934
7QIZ|1|2|C|2935
7QIZ|1|2|C|2936
7QIZ|1|2|A|2937
7QIZ|1|2|A|2938
7QIZ|1|2|U|2939
7QIZ|1|2|A|2940

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Q

Pectinesterase

Chain X

60S ribosomal protein uL14