J3_7QIZ_023
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGGA*UAC*G(7MG)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_023 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0777
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7QIZ|1|S2|U|1171
7QIZ|1|S2|G|1172
7QIZ|1|S2|G|1173
7QIZ|1|S2|A|1174
*
7QIZ|1|S2|U|1473
7QIZ|1|S2|A|1474
7QIZ|1|S2|C|1475
*
7QIZ|1|S2|G|1580
7QIZ|1|S2|7MG|1581
7QIZ|1|S2|A|1582
7QIZ|1|S2|A|1583
Current chains
- Chain S2
- 18S
Nearby chains
- Chain OA
- Ribosomal_S7 domain-containing protein
- Chain RA
- 40S ribosomal protein uS9
- Chain TA
- 40S ribosomal protein uS13
- Chain UA
- 40S ribosomal protein eS19
- Chain aA
- tRNA_1
Coloring options: