J3_7QIZ_029
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CG(A2M)G
- Length
- 17 nucleotides
- Bulged bases
- 7QIZ|1|S2|U|1478, 7QIZ|1|S2|G|1545
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_029 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1216
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|C|1475
7QIZ|1|S2|A|1476
7QIZ|1|S2|C|1477
7QIZ|1|S2|U|1478
7QIZ|1|S2|G|1479
*
7QIZ|1|S2|C|1539
7QIZ|1|S2|G|1540
7QIZ|1|S2|U|1541
7QIZ|1|S2|G|1542
7QIZ|1|S2|A|1543
7QIZ|1|S2|U|1544
7QIZ|1|S2|G|1545
7QIZ|1|S2|G|1546
*
7QIZ|1|S2|C|1577
7QIZ|1|S2|G|1578
7QIZ|1|S2|A2M|1579
7QIZ|1|S2|G|1580
Current chains
- Chain S2
- 18S
Nearby chains
- Chain OA
- Ribosomal_S7 domain-containing protein
- Chain TA
- 40S ribosomal protein uS13
- Chain UA
- 40S ribosomal protein eS19
- Chain ZA
- 40S ribosomal protein S25
Coloring options: