J3_7QIZ_043
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AC*GAUACUU*AGUCU
- Length
- 14 nucleotides
- Bulged bases
- 7QIZ|1|8|U|65, 7QIZ|1|8|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_043 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1118
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
7QIZ|1|8|A|49
7QIZ|1|8|C|50
*
7QIZ|1|8|G|63
7QIZ|1|8|A|64
7QIZ|1|8|U|65
7QIZ|1|8|A|66
7QIZ|1|8|C|67
7QIZ|1|8|U|68
7QIZ|1|8|U|69
*
7QIZ|1|8|A|101
7QIZ|1|8|G|102
7QIZ|1|8|U|103
7QIZ|1|8|C|104
7QIZ|1|8|U|105
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain Z
- Ribosomal_L23eN domain-containing protein
- Chain j
- Similar to 60S ribosomal protein L35
- Chain l
- Ribosomal protein L37
- Chain n
- 60S ribosomal protein eL39
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