J3_7QIZ_049
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- (OMC)CAGAC*GGGUG*(OMU)UAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7QIZ|1|S2|A|1220, 7QIZ|1|S2|G|1450, 7QIZ|1|S2|U|1452
- QA status
- Modified nucleotides: OMC, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_049 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1469
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|S2|OMC|1218
7QIZ|1|S2|C|1219
7QIZ|1|S2|A|1220
7QIZ|1|S2|G|1221
7QIZ|1|S2|A|1222
7QIZ|1|S2|C|1223
*
7QIZ|1|S2|G|1266
7QIZ|1|S2|G|1267
7QIZ|1|S2|G|1268
7QIZ|1|S2|U|1269
7QIZ|1|S2|G|1270
*
7QIZ|1|S2|OMU|1447
7QIZ|1|S2|U|1448
7QIZ|1|S2|A|1449
7QIZ|1|S2|G|1450
7QIZ|1|S2|A|1451
7QIZ|1|S2|U|1452
7QIZ|1|S2|G|1453
Current chains
- Chain S2
- 18S
Nearby chains
- Chain PA
- S10_plectin domain-containing protein
- Chain XA
- 40S ribosomal protein uS14
Coloring options: