J3_7QP6_009

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7QP6|1|A|G|1274, 7QP6|1|A|G|1507, 7QP6|1|A|U|1509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QP6_009 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.2162

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7QP6|1|A|C|1272
7QP6|1|A|C|1273
7QP6|1|A|G|1274
7QP6|1|A|G|1275
7QP6|1|A|A|1276
7QP6|1|A|C|1277
*
7QP6|1|A|G|1320
7QP6|1|A|G|1321
7QP6|1|A|G|1322
7QP6|1|A|U|1323
7QP6|1|A|G|1324
*
7QP6|1|A|U|1504
7QP6|1|A|U|1505
7QP6|1|A|A|1506
7QP6|1|A|G|1507
7QP6|1|A|A|1508
7QP6|1|A|U|1509
7QP6|1|A|G|1510

Current chains

Chain A

18S rRNA

Nearby chains

Chain a

40S ribosomal protein S10

Chain k

Ubiquitin-40S ribosomal protein S27a