J3_7QVP_002
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 7QVP|1|L1|A|62, 7QVP|1|L1|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QVP_002 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.2023
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
7QVP|1|L1|A|44
7QVP|1|L1|C|45
*
7QVP|1|L1|G|58
7QVP|1|L1|A|59
7QVP|1|L1|G|60
7QVP|1|L1|A|61
7QVP|1|L1|A|62
7QVP|1|L1|U|63
7QVP|1|L1|U|64
*
7QVP|1|L1|A|95
7QVP|1|L1|C|96
7QVP|1|L1|A|97
7QVP|1|L1|C|98
7QVP|1|L1|U|99
Current chains
- Chain L1
- 5.8S ribosomal RNA
Nearby chains
- Chain MX
- 60S ribosomal protein L23a
- Chain Mh
- 60S ribosomal protein L35
- Chain Mj
- Ribosomal protein L37
- Chain Ml
- 60S ribosomal protein L39
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