J3_7QVP_021

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

7QVP|1|L6|U|2788, 7QVP|1|L6|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QVP_021 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1025

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7QVP|1|L6|G|2402
7QVP|1|L6|A|2403
7QVP|1|L6|A|2404
7QVP|1|L6|G|2405
*
7QVP|1|L6|C|2785
7QVP|1|L6|C|2786
7QVP|1|L6|A|2787
7QVP|1|L6|U|2788
7QVP|1|L6|A|2789
7QVP|1|L6|U|2790
7QVP|1|L6|C|2791
*
7QVP|1|L6|G|2800
7QVP|1|L6|U|2801
7QVP|1|L6|C|2802

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain Mg

60S ribosomal protein L34

Chain Mj

Ribosomal protein L37

Chain Ml

60S ribosomal protein L39