J3_7QVP_028

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7QVP|1|L6|A|4464, 7QVP|1|L6|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QVP_028 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1122

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7QVP|1|L6|U|4463
7QVP|1|L6|A|4464
7QVP|1|L6|U|4465
7QVP|1|L6|C|4466
*
7QVP|1|L6|G|4491
7QVP|1|L6|U|4492
7QVP|1|L6|U|4493
*
7QVP|1|L6|A|4507
7QVP|1|L6|C|4508
7QVP|1|L6|U|4509
7QVP|1|L6|A|4510
7QVP|1|L6|A|4511
7QVP|1|L6|U|4512
7QVP|1|L6|A|4513

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain MV

60S ribosomal protein L23