J3_7QVP_059
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 7QVP|1|S3|U|1535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QVP_059 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.2844
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7QVP|1|S3|C|1532
7QVP|1|S3|A|1533
7QVP|1|S3|C|1534
7QVP|1|S3|U|1535
7QVP|1|S3|G|1536
*
7QVP|1|S3|C|1597
7QVP|1|S3|G|1598
7QVP|1|S3|U|1599
7QVP|1|S3|G|1600
7QVP|1|S3|A|1601
7QVP|1|S3|U|1602
7QVP|1|S3|G|1603
7QVP|1|S3|G|1604
*
7QVP|1|S3|C|1635
7QVP|1|S3|G|1636
7QVP|1|S3|A|1637
7QVP|1|S3|G|1638
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain RF
- 40S ribosomal protein S5
- Chain RS
- 40S ribosomal protein S18
- Chain RT
- 40S ribosomal protein S19
- Chain RZ
- 40S ribosomal protein S25
Coloring options: