J3_7QVP_085

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7QVP|1|S3|G|1274, 7QVP|1|S3|G|1507, 7QVP|1|S3|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QVP_085 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.2579

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7QVP|1|S3|C|1272
7QVP|1|S3|C|1273
7QVP|1|S3|G|1274
7QVP|1|S3|G|1275
7QVP|1|S3|A|1276
7QVP|1|S3|C|1277
*
7QVP|1|S3|G|1320
7QVP|1|S3|G|1321
7QVP|1|S3|G|1322
7QVP|1|S3|U|1323
7QVP|1|S3|G|1324
*
7QVP|1|S3|U|1504
7QVP|1|S3|U|1505
7QVP|1|S3|A|1506
7QVP|1|S3|G|1507
7QVP|1|S3|A|1508
7QVP|1|S3|U|1509
7QVP|1|S3|G|1510

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RK

40S ribosomal protein S10

Chain Rd

40S ribosomal protein S29

Chain Rh

Ubiquitin-40S ribosomal protein S27a