J3_7S0S_008

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7S0S|1|C|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S0S_008 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.112

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7S0S|1|C|C|1421
7S0S|1|C|A|1422
7S0S|1|C|A|1423
7S0S|1|C|G|1424
*
7S0S|1|C|C|1823
7S0S|1|C|C|1824
7S0S|1|C|C|1825
7S0S|1|C|A|1826
7S0S|1|C|A|1827
7S0S|1|C|A|1828
7S0S|1|C|C|1829
*
7S0S|1|C|G|1838
7S0S|1|C|U|1839
7S0S|1|C|G|1840

Current chains

Chain C

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L34