J3_7S1H_028

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7S1H|1|C|C|48, 7S1H|1|C|A|50, 7S1H|1|C|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1H_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0772

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7S1H|1|C|G|46
7S1H|1|C|C|47
7S1H|1|C|C|48
7S1H|1|C|U|49
7S1H|1|C|A|50
7S1H|1|C|A|51
7S1H|1|C|C|52
*
7S1H|1|C|G|359
7S1H|1|C|G|360
7S1H|1|C|G|361
7S1H|1|C|G|362
7S1H|1|C|A|363
7S1H|1|C|A|364
7S1H|1|C|U|365
7S1H|1|C|A|366
7S1H|1|C|U|367
*
7S1H|1|C|A|393
7S1H|1|C|G|394
7S1H|1|C|C|395

Current chains

Chain C

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S12

Chain x

30S ribosomal protein S16