J3_7SYH_003
3D structure
- PDB id
- 7SYH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7SYH|1|2|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SYH_003 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1619
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7SYH|1|2|A|938
7SYH|1|2|U|939
7SYH|1|2|U|940
7SYH|1|2|C|941
*
7SYH|1|2|G|985
7SYH|1|2|G|986
7SYH|1|2|A|987
7SYH|1|2|C|988
7SYH|1|2|C|989
7SYH|1|2|A|990
7SYH|1|2|G|991
7SYH|1|2|A|992
7SYH|1|2|G|993
*
7SYH|1|2|C|1000
7SYH|1|2|A|1001
7SYH|1|2|U|1002
7SYH|1|2|U|1003
7SYH|1|2|U|1004
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S3a
- Chain O
- uS15
- Chain P
- uS11
- Chain b
- 40S ribosomal protein S26
Coloring options: