J3_7SYV_009

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

7SYV|1|2|G|1274, 7SYV|1|2|G|1507, 7SYV|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYV_009 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.5053

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7SYV|1|2|C|1273
7SYV|1|2|G|1274
7SYV|1|2|G|1275
7SYV|1|2|A|1276
7SYV|1|2|C|1277
*
7SYV|1|2|G|1320
7SYV|1|2|G|1321
7SYV|1|2|G|1322
7SYV|1|2|U|1323
7SYV|1|2|G|1324
*
7SYV|1|2|U|1504
7SYV|1|2|U|1505
7SYV|1|2|A|1506
7SYV|1|2|G|1507
7SYV|1|2|A|1508
7SYV|1|2|U|1509
7SYV|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain e

eS29

Chain g

40S ribosomal protein S27a