J3_7TOQ_006
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOQ_006 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1598
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7TOQ|1|A18S|U|1225
7TOQ|1|A18S|G|1226
7TOQ|1|A18S|G|1227
7TOQ|1|A18S|A|1228
*
7TOQ|1|A18S|U|1530
7TOQ|1|A18S|A|1531
7TOQ|1|A18S|C|1532
*
7TOQ|1|A18S|G|1638
7TOQ|1|A18S|G|1639
7TOQ|1|A18S|A|1640
7TOQ|1|A18S|A|1641
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS05
- Ribosomal protein S5
- Chain AS16
- uS9
- Chain AS18
- 40S ribosomal protein S18
- Chain AS19
- eS19
- Chain PTRN
- Transfer RNA; tRNA
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