J3_7TOQ_008
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7TOQ|1|A18S|G|1507, 7TOQ|1|A18S|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOQ_008 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.2065
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7TOQ|1|A18S|C|1272
7TOQ|1|A18S|C|1273
7TOQ|1|A18S|G|1274
7TOQ|1|A18S|G|1275
7TOQ|1|A18S|A|1276
7TOQ|1|A18S|C|1277
*
7TOQ|1|A18S|G|1320
7TOQ|1|A18S|G|1321
7TOQ|1|A18S|G|1322
7TOQ|1|A18S|U|1323
7TOQ|1|A18S|G|1324
*
7TOQ|1|A18S|U|1504
7TOQ|1|A18S|U|1505
7TOQ|1|A18S|A|1506
7TOQ|1|A18S|G|1507
7TOQ|1|A18S|A|1508
7TOQ|1|A18S|U|1509
7TOQ|1|A18S|G|1510
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS10
- 40S ribosomal protein S10
- Chain AS29
- 40S ribosomal protein S29
- Chain AS31
- 40S ribosomal protein S27a
Coloring options: