J3_7TOS_036

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOS_036 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1097

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7TOS|1|23S|G|1424
7TOS|1|23S|G|1425
7TOS|1|23S|G|1426
7TOS|1|23S|A|1427
7TOS|1|23S|C|1428
7TOS|1|23S|G|1429
*
7TOS|1|23S|C|1564
7TOS|1|23S|C|1565
*
7TOS|1|23S|G|1568
7TOS|1|23S|A|1569
7TOS|1|23S|A|1570
7TOS|1|23S|A|1571
7TOS|1|23S|A|1572
7TOS|1|23S|G|1573
7TOS|1|23S|C|1574

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2