J3_7UPH_004

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7UPH|1|I|U|870, 7UPH|1|I|A|872

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.2103

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7UPH|1|I|C|825
7UPH|1|I|U|826
7UPH|1|I|U|827
7UPH|1|I|G|828
*
7UPH|1|I|C|856
7UPH|1|I|G|857
7UPH|1|I|G|858
7UPH|1|I|A|859
7UPH|1|I|G|860
*
7UPH|1|I|C|867
7UPH|1|I|G|868
7UPH|1|I|U|869
7UPH|1|I|U|870
7UPH|1|I|A|871
7UPH|1|I|A|872
7UPH|1|I|G|873

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain W

30S ribosomal protein S2

Chain c

30S ribosomal protein S8