J3_7UPH_011
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 7UPH|1|I|U|1239, 7UPH|1|I|C|1335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UPH_011 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.213
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|C|1236
7UPH|1|I|A|1237
7UPH|1|I|A|1238
7UPH|1|I|U|1239
7UPH|1|I|G|1240
*
7UPH|1|I|C|1295
7UPH|1|I|G|1296
7UPH|1|I|U|1297
7UPH|1|I|A|1298
7UPH|1|I|G|1299
7UPH|1|I|U|1300
7UPH|1|I|C|1301
7UPH|1|I|C|1302
*
7UPH|1|I|G|1333
7UPH|1|I|U|1334
7UPH|1|I|C|1335
7UPH|1|I|G|1336
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S7
- Chain h
- 30S ribosomal protein S13
Coloring options: