J3_7UPH_015

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

7UPH|1|I|A|1571, 7UPH|1|I|A|1573, 7UPH|1|I|A|1574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_015 not in the Motif Atlas

Geometric match to J3_8C3A_060

Geometric discrepancy: 0.1786

The information below is about J3_8C3A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38265.2

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

8

Unit IDs

7UPH|1|I|A|1556
7UPH|1|I|C|1557
*
7UPH|1|I|G|1570
7UPH|1|I|A|1571
7UPH|1|I|U|1572
7UPH|1|I|A|1573
7UPH|1|I|A|1574
7UPH|1|I|G|1575
7UPH|1|I|C|1576
*
7UPH|1|I|G|1610
7UPH|1|I|A|1611
7UPH|1|I|U|1612
7UPH|1|I|U|1613
7UPH|1|I|U|1614

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain k

50S ribosomal protein L34

Chain s

50S ribosomal protein L23

Chain x

50S ribosomal protein L29