J3_7UPH_017

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_017 not in the Motif Atlas

Geometric match to J3_7A0S_005

Geometric discrepancy: 0.2059

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7UPH|1|I|C|2198
7UPH|1|I|A|2199
7UPH|1|I|G|2200
*
7UPH|1|I|C|2232
7UPH|1|I|G|2233
7UPH|1|I|A|2234
7UPH|1|I|A|2235
7UPH|1|I|C|2236
*
7UPH|1|I|G|2260
7UPH|1|I|A|2261
7UPH|1|I|U|2262
7UPH|1|I|G|2263

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2