J3_7UPH_018

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_018 not in the Motif Atlas

Geometric match to J3_6PRV_001

Geometric discrepancy: 0.233

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

7UPH|1|I|G|2549
7UPH|1|I|G|2550
7UPH|1|I|A|2551
*
7UPH|1|I|U|2575
7UPH|1|I|U|2576
7UPH|1|I|U|2577
7UPH|1|I|A|2578
7UPH|1|I|A|2579
7UPH|1|I|A|2580
7UPH|1|I|G|2581
*
7UPH|1|I|C|2596
7UPH|1|I|A|2597
7UPH|1|I|C|2598

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain m

50S ribosomal protein L36