J3_7UPH_019

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

7UPH|1|I|A|2796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_019 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.2179

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7UPH|1|I|C|2792
7UPH|1|I|G|2793
7UPH|1|I|G|2794
7UPH|1|I|A|2795
7UPH|1|I|A|2796
7UPH|1|I|G|2797
*
7UPH|1|I|C|3119
7UPH|1|I|A|3120
7UPH|1|I|G|3121
*
7UPH|1|I|C|3133
7UPH|1|I|A|3134
7UPH|1|I|A|3135
7UPH|1|I|G|3136

Current chains

Chain I

Tethered rRNA

Nearby chains