J3_7UPH_021

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_021 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.5108

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7UPH|1|I|C|3585
7UPH|1|I|U|3586
7UPH|1|I|G|3587
*
7UPH|1|I|C|3690
7UPH|1|I|U|3691
7UPH|1|I|A|3692
7UPH|1|I|A|3693
7UPH|1|I|C|3694
*
7UPH|1|I|G|3717
7UPH|1|I|G|3718
7UPH|1|I|A|3719
7UPH|1|I|C|3720
7UPH|1|I|A|3721
7UPH|1|I|G|3722

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain w

50S ribosomal protein L28