J3_7UPH_031
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UPH_031 not in the Motif Atlas
- Geometric match to J3_5J7L_069
- Geometric discrepancy: 0.2259
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|G|2918
7UPH|1|I|G|2919
7UPH|1|I|G|2920
7UPH|1|I|A|2921
7UPH|1|I|C|2922
7UPH|1|I|G|2923
*
7UPH|1|I|C|3058
7UPH|1|I|C|3059
*
7UPH|1|I|G|3062
7UPH|1|I|A|3063
7UPH|1|I|A|3064
7UPH|1|I|A|3065
7UPH|1|I|A|3066
7UPH|1|I|G|3067
7UPH|1|I|C|3068
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
Coloring options: