J3_7WTM_004

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

7WTM|1|C2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTM_004 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.0855

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76375.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

7WTM|1|C2|A|881
7WTM|1|C2|U|882
7WTM|1|C2|C|883
7WTM|1|C2|A|884
*
7WTM|1|C2|U|928
7WTM|1|C2|A|929
7WTM|1|C2|A|930
7WTM|1|C2|C|931
7WTM|1|C2|U|932
7WTM|1|C2|A|933
7WTM|1|C2|C|934
7WTM|1|C2|U|935
7WTM|1|C2|G|936
*
7WTM|1|C2|C|943
7WTM|1|C2|A|944
7WTM|1|C2|U|945
7WTM|1|C2|U|946
7WTM|1|C2|U|947

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CA

Pre-rRNA-processing protein PNO1

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A