J3_7WTR_006

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7WTR|1|C2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTR_006 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.0789

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

7WTR|1|C2|A|41
7WTR|1|C2|G|42
7WTR|1|C2|A|43
7WTR|1|C2|U|44
7WTR|1|C2|U|45
7WTR|1|C2|A|46
7WTR|1|C2|A|47
7WTR|1|C2|G|48
*
7WTR|1|C2|C|431
7WTR|1|C2|G|432
7WTR|1|C2|C|433
7WTR|1|C2|G|434
7WTR|1|C2|C|435
7WTR|1|C2|A|436
7WTR|1|C2|A|437
7WTR|1|C2|A|438
7WTR|1|C2|U|439
*
7WTR|1|C2|A|464
7WTR|1|C2|G|465
7WTR|1|C2|U|466

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein TSR1

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A