3D structure

PDB id
7WTU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
AUUC*GGACCAGAG*CAUUU
Length
18 nucleotides
Bulged bases
7WTU|1|2|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7WTU_004 not in the Motif Atlas
Homologous match to J3_8P9A_074
Geometric discrepancy: 0.2579
The information below is about J3_8P9A_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76375.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

7WTU|1|2|A|938
7WTU|1|2|U|939
7WTU|1|2|U|940
7WTU|1|2|C|941
*
7WTU|1|2|G|985
7WTU|1|2|G|986
7WTU|1|2|A|987
7WTU|1|2|C|988
7WTU|1|2|C|989
7WTU|1|2|A|990
7WTU|1|2|G|991
7WTU|1|2|A|992
7WTU|1|2|G|993
*
7WTU|1|2|C|1000
7WTU|1|2|A|1001
7WTU|1|2|U|1002
7WTU|1|2|U|1003
7WTU|1|2|U|1004

Current chains

Chain 2
18S rRNA

Nearby chains

Chain B
40S ribosomal protein S3a
Chain N
40S ribosomal protein S13
Chain O
40S ribosomal protein S14
Chain x
RNA-binding protein PNO1

Coloring options:


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