J3_7XNY_004

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGA(A2M)CUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7XNY|1|L1|G|1641

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XNY_004 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0565

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7XNY|1|L1|U|1531
7XNY|1|L1|G|1532
7XNY|1|L1|A|1533
7XNY|1|L1|A2M|1534
7XNY|1|L1|C|1535
7XNY|1|L1|U|1536
7XNY|1|L1|A|1537
*
7XNY|1|L1|U|1622
7XNY|1|L1|A|1623
7XNY|1|L1|G|1624
*
7XNY|1|L1|C|1640
7XNY|1|L1|G|1641
7XNY|1|L1|A|1642
7XNY|1|L1|A|1643

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37