J3_7XNY_007

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7XNY|1|L1|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XNY_007 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0786

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7XNY|1|L1|C|2393
7XNY|1|L1|G|2394
7XNY|1|L1|A|2395
7XNY|1|L1|A|2396
7XNY|1|L1|G|2397
7XNY|1|L1|U|2398
7XNY|1|L1|G|2399
*
7XNY|1|L1|C|2805
7XNY|1|L1|A|2806
7XNY|1|L1|A|2807
*
7XNY|1|L1|U|2819
7XNY|1|L1|C|2820
7XNY|1|L1|U|2821
7XNY|1|L1|G|2822

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34