J3_7XNY_008

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

7XNY|1|L1|U|2788, 7XNY|1|L1|A|2789

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XNY_008 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.0853

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7XNY|1|L1|G|2402
7XNY|1|L1|A|2403
7XNY|1|L1|A|2404
7XNY|1|L1|G|2405
*
7XNY|1|L1|C|2785
7XNY|1|L1|C|2786
7XNY|1|L1|A2M|2787
7XNY|1|L1|U|2788
7XNY|1|L1|A|2789
7XNY|1|L1|U|2790
7XNY|1|L1|C|2791
*
7XNY|1|L1|G|2800
7XNY|1|L1|U|2801
7XNY|1|L1|C|2802

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39