J3_7XNY_015

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7XNY|1|L1|A|4464, 7XNY|1|L1|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XNY_015 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.075

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7XNY|1|L1|U|4463
7XNY|1|L1|A|4464
7XNY|1|L1|U|4465
7XNY|1|L1|C|4466
*
7XNY|1|L1|G|4491
7XNY|1|L1|U|4492
7XNY|1|L1|U|4493
*
7XNY|1|L1|A|4507
7XNY|1|L1|C|4508
7XNY|1|L1|U|4509
7XNY|1|L1|A|4510
7XNY|1|L1|A|4511
7XNY|1|L1|U|4512
7XNY|1|L1|A|4513

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23