J3_7XNY_035

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

7XNY|1|L1|A|1805, 7XNY|1|L1|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XNY_035 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4196

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7XNY|1|L1|U|1726
7XNY|1|L1|U|1727
*
7XNY|1|L1|A|1802
7XNY|1|L1|G|1803
7XNY|1|L1|A|1804
7XNY|1|L1|A|1805
7XNY|1|L1|G|1806
*
7XNY|1|L1|C|1832
7XNY|1|L1|G|1833
7XNY|1|L1|U|1834
7XNY|1|L1|G|1835
7XNY|1|L1|G|1836
7XNY|1|L1|A|1837

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29