J3_7XNY_045
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- (OMC)CGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7XNY|1|S2|G|1274, 7XNY|1|S2|G|1507, 7XNY|1|S2|U|1509
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7XNY_045 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1402
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7XNY|1|S2|OMC|1272
7XNY|1|S2|C|1273
7XNY|1|S2|G|1274
7XNY|1|S2|G|1275
7XNY|1|S2|A|1276
7XNY|1|S2|C|1277
*
7XNY|1|S2|G|1320
7XNY|1|S2|G|1321
7XNY|1|S2|G|1322
7XNY|1|S2|U|1323
7XNY|1|S2|G|1324
*
7XNY|1|S2|U|1504
7XNY|1|S2|U|1505
7XNY|1|S2|A|1506
7XNY|1|S2|G|1507
7XNY|1|S2|A|1508
7XNY|1|S2|U|1509
7XNY|1|S2|G|1510
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
Coloring options: