J3_7Z34_024
3D structure
- PDB id
- 7Z34 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of pre-60S particle bound to DRG1(AFG2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 7Z34|1|1|G|2549, 7Z34|1|1|U|2550, 7Z34|1|1|U|2551, 7Z34|1|1|C|2552, 7Z34|1|1|U|2553, 7Z34|1|1|A|2554, 7Z34|1|1|U|2558, 7Z34|1|1|U|2559, 7Z34|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7Z34_024 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.3179
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7Z34|1|1|A|2529
7Z34|1|1|G|2530
7Z34|1|1|C|2531
7Z34|1|1|U|2532
*
7Z34|1|1|A|2547
7Z34|1|1|C|2548
7Z34|1|1|G|2549
7Z34|1|1|U|2550
7Z34|1|1|U|2551
7Z34|1|1|C|2552
7Z34|1|1|U|2553
7Z34|1|1|A|2554
7Z34|1|1|G|2555
7Z34|1|1|C|2556
7Z34|1|1|A|2557
7Z34|1|1|U|2558
7Z34|1|1|U|2559
7Z34|1|1|C|2560
7Z34|1|1|A|2561
7Z34|1|1|A|2562
7Z34|1|1|G|2563
*
7Z34|1|1|U|2578
7Z34|1|1|G|2579
7Z34|1|1|A|2580
7Z34|1|1|U|2581
Current chains
- Chain 1
- 35S pre-ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
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