J3_7Z3O_017

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAU*AAG*UUGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Z3O_017 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.191

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7Z3O|1|2|A|759
7Z3O|1|2|G|760
7Z3O|1|2|A|761
7Z3O|1|2|U|762
*
7Z3O|1|2|A|772
7Z3O|1|2|A|773
7Z3O|1|2|G|774
*
7Z3O|1|2|U|783
7Z3O|1|2|U|784
7Z3O|1|2|G|785
7Z3O|1|2|A|786
7Z3O|1|2|A|787
7Z3O|1|2|U|788

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein s9-like protein

Chain SY

40S ribosomal protein S24