J3_7Z3O_052

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

7Z3O|1|2|A|1214, 7Z3O|1|2|G|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Z3O_052 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.4258

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7Z3O|1|2|C|1213
7Z3O|1|2|A|1214
7Z3O|1|2|G|1215
7Z3O|1|2|A|1216
7Z3O|1|2|C|1217
*
7Z3O|1|2|G|1260
7Z3O|1|2|G|1261
7Z3O|1|2|G|1262
7Z3O|1|2|U|1263
7Z3O|1|2|G|1264
*
7Z3O|1|2|U|1438
7Z3O|1|2|U|1439
7Z3O|1|2|A|1440
7Z3O|1|2|G|1441
7Z3O|1|2|A|1442
7Z3O|1|2|U|1443
7Z3O|1|2|G|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein s10-like protein

Chain Sd

Ribosomal protein uS14

Chain Sf

40S ribosomal protein S27a-like protein