J3_7Z3O_060

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Z3O_060 not in the Motif Atlas

Homologous match to J3_8CRE_078

Geometric discrepancy: 0.1577

The information below is about J3_8CRE_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7Z3O|1|2|C|1158
7Z3O|1|2|C|1159
7Z3O|1|2|A|1160
7Z3O|1|2|G|1161
*
7Z3O|1|2|C|1577
7Z3O|1|2|U|1578
7Z3O|1|2|A|1579
7Z3O|1|2|G|1580
7Z3O|1|2|U|1581
7Z3O|1|2|A|1582
7Z3O|1|2|A|1583
*
7Z3O|1|2|U|1605
7Z3O|1|2|G|1606
7Z3O|1|2|A|1607
7Z3O|1|2|U|1608
7Z3O|1|2|U|1609
7Z3O|1|2|A|1610
7Z3O|1|2|C|1611
7Z3O|1|2|G|1612

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein s5-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain Sc

40S ribosomal protein S28-like protein