J3_7ZJW_007
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAG*CC(A2M)UAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 7ZJW|1|L5|U|2631, 7ZJW|1|L5|A|2632
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJW_007 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.1042
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7ZJW|1|L5|G|2245
7ZJW|1|L5|A|2246
7ZJW|1|L5|A|2247
7ZJW|1|L5|G|2248
*
7ZJW|1|L5|C|2628
7ZJW|1|L5|C|2629
7ZJW|1|L5|A2M|2630
7ZJW|1|L5|U|2631
7ZJW|1|L5|A|2632
7ZJW|1|L5|U|2633
7ZJW|1|L5|C|2634
*
7ZJW|1|L5|G|2643
7ZJW|1|L5|U|2644
7ZJW|1|L5|C|2645
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Lj
- 60S ribosomal protein L34
- Chain Lm
- 60S ribosomal protein L37
- Chain Lo
- 60S ribosomal protein eL39
Coloring options: