3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAAG*CC(A2M)UAUC*GUC
Length
14 nucleotides
Bulged bases
7ZJW|1|L5|U|2631, 7ZJW|1|L5|A|2632
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ZJW_007 not in the Motif Atlas
Homologous match to J3_8C3A_007
Geometric discrepancy: 0.1042
The information below is about J3_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_74051.1
Basepair signature
cWW-tSH-tWW-tHW-F-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

7ZJW|1|L5|G|2245
7ZJW|1|L5|A|2246
7ZJW|1|L5|A|2247
7ZJW|1|L5|G|2248
*
7ZJW|1|L5|C|2628
7ZJW|1|L5|C|2629
7ZJW|1|L5|A2M|2630
7ZJW|1|L5|U|2631
7ZJW|1|L5|A|2632
7ZJW|1|L5|U|2633
7ZJW|1|L5|C|2634
*
7ZJW|1|L5|G|2643
7ZJW|1|L5|U|2644
7ZJW|1|L5|C|2645

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Lj
60S ribosomal protein L34
Chain Lm
60S ribosomal protein L37
Chain Lo
60S ribosomal protein eL39

Coloring options:


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